Electron and light microscopy, PS-OCT, MRI, fMRI, EEG and MEG. Run reproducible analyses on shared supercomputers, look at the results in your browser, publish them with a DOI.
Free for researchers · funded by NIH, NSF, DoD, Kavli, Wellcome
Stylised views of the datatypes that are live on the platform today, in the order of the scale they measure. Upload your own or import from public archives; 139 datatypes keep Apps interoperable.
Every card is a record from the publication registry: title, DOI, authors and institutions, and the clips and banner images the authors attached. The order shuffles on each visit.
Any GitHub repository becomes a containerized App. Jobs run on TACC, Jetstream2 and ACCESS, and every output opens in NiiVue or Neuroglancer. Each card names what the App does and who maintains it.
This app will align a T1w image to the ACPC plane (specifically, the MNI152_T1_1mm template from FSL using a 6 DOF alignment via FSL commands. This protocol was adapted from the HCP Preprocessing Pipe
Maintained by The Brainlife Team, Brent McPherson, Brad Caronbrainlife/app-hcp-acpc-alignment4,407,496 runs · 223 users
Freesurfer segments the t1w anatomical data into functionally different parts of the brain. Segmentation/parcellation can then be fed to many other subsequent analysis.
Maintained by Giulia Berto, Brad Caron, The Brainlife Team, Franco Pestillibrainlife/app-freesurfer774,031 runs · 992 usersSee the repository for details.
Maintained by Brad Caronbrainlife/app-freesurfer-stats179,838 runs · 285 users
brainlife.io version of maTT
Maintained by The Brainlife Team, Josh Faskowitz, Franco Pestilli, Brent McPherson, Brad Caronfaskowit/app-multiAtlasTT145,960 runs · 154 users
fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan
Maintained by Brad Caron, Daniel Levitas, David Hunt, Giulia Berto, Josh Faskowitz, The Brainlife Team, Eva Bacasbrainlife/app-fmriprep137,032 runs · 351 usersSee the repository for details.
Maintained by Brad Caronbrainlife/app-fsl-anat115,250 runs · 468 usersRun the recommended preprocessing procedure provided by mrtrix3. The options available mostly reflect the optimal DESIGNER pipeline that was recently proposed. This App runs for >15 on topup if both P
Maintained by Brent McPherson, Giulia Berto, Brad Caronbrainlife/app-mrtrix3-preproc76,615 runs · 165 usersSee the repository for details.
Maintained by Brad Caronbrainlife/app-cortex-tissue-mapping-stats62,435 runs · 111 users
Classifies streamlines into known anatomical tracts.
Maintained by Brad Caron, Daniel Bullock, Franco Pestilli, Giulia Bertobrainlife/app-wmaSeg48,959 runs · 123 usersBrain Extraction via FSL's BET command
Maintained by Sandesh PATILbrainlife/app-FSLBET47,688 runs · 182 usersThis app will map volumated measure files (i.e. tensor, NODDI) to the cortical surface following Fukutomi et al (2018; 10.1016/j.neuroimage.2018.02.017) using Connectome Workbench.
Maintained by Brad Caronbrainlife/app-cortex-tissue-mapping46,362 runs · 25 usersCompute many statistics from your input tractogram and any (optionally input) associated classification structure. These statistics can be used to facilitate quality assurance on your tractography and
Maintained by Brad Caron, Franco Pestilli, Giulia Berto, The Brainlife Teambrainlife/app-tractographyQualityCheck42,161 runs · 73 usersbrainlife builds a few tools of its own, partners on others, and wraps the community’s standard software as Apps so it runs on shared compute without installation.
Authors of the most recent publications, pulled from the publication registry so this never goes stale.